Chun-Wei Tung : Curriculum Vitae

Education

2001 - 2005, B.S., Department of Biology, National Cheng Kung University, Tainan, Taiwan

2005 - 2006, Master student, Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan

2006 - present, Direct PhD student, Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan

 

Experience

2008 - 2009, Visiting research, Wilhelm Schickard Institute for Computer Science, Eberhard Karls University Tübingen, Tübingen, Germany (Professor Oliver Kohlbacher)

Project

2004 - 2005, Identification of microRNAs from Phalaenopsis equestris by bioinformatics, NSC College Student Research Project (NSC 93-2815-C-006 -084 -B).

Professional Certification and Awards

2004 - SUN Certified JAVA Programmer (SCJP 1.4)

2007 - The Research Excellence Award of National Chiao Tung University

2008 - The Research Excellence Award of National Chiao Tung University

2008 - The Scholarship of Sandwich Program for research visits to Germany (supported by DAAD of Germany and NSC of Taiwan)

Professional Service

Reviewer for Journal of Proteomics & Bioinformatics

Reviewer for Bioinformatics and Biology Insights

Program committee, The special session "Evolutionary Computation in Bioinformatics and Computational Biology" of 2009 IEEE Congress on Evolutionary Computation. Trondheim, Norway (CEC 2009)

Journal Papers

Hsu, Kai-Ti, Hui-Ling Huang, Chun-Wei Tung, Yi-Hsiung Chen, and Shinn-Ying Ho. Analysis of Physicochemical Properties on Prediction of R5, X4 and R5X4 HIV-1 Coreceptor Usage. Citeseer, 2009. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.193.3185&rep=rep1&type=pdf.
Huang, Wen-Lin, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, and Shinn-Ying Ho. “ProLoc-GO: Utilizing Informative Gene Ontology Terms for Sequence-Based Prediction of Protein Subcellular Localization.” BMC Bioinformatics 9 (2008): 80. https://doi.org/10.1186/1471-2105-9-80.
Huang, Wen-Lin, Chun-Wei Tung, Hui-Ling Huang, and Shinn-Ying Ho. “Predicting Protein Subnuclear Localization Using GO-Amino-Acid Composition Features.” Bio Systems, July 4, 2009. https://doi.org/10.1016/j.biosystems.2009.06.007.
Huang, Wen-Lin, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, and Shinn-Ying Ho. “ProLoc: Prediction of Protein Subnuclear Localization Using SVM with Automatic Selection from Physicochemical Composition Features.” Bio Systems 90, no. 2 (October 2007): 573–81. https://doi.org/10.1016/j.biosystems.2007.01.001.
Liaw, Chyn, Chun-Wei Tung, and Shinn-Ying Ho. “Prediction and Analysis of Antibody Amyloidogenesis from Sequences.” PLoS ONE 8, no. 1 (January 7, 2013): e53235. https://doi.org/10.1371/journal.pone.0053235.
Tsai, Wen-Chieh, Yu-Yun Hsiao, Shu-Hua Lee, Chun-Wei Tung, Dan-Ping Wang, Hei-Chia Wang, Wen-Huei Chen, and Hong-Hwa Chen. “Expression Analysis of the ESTs Derived from the Flower Buds of Phalaenopsis Equestris.” Plant Science 170, no. 3 (March 2006): 426–32. https://doi.org/doi: DOI: 10.1016/j.plantsci.2005.08.029.
Tung, Chun-Wei. “PupDB: A Database of Pupylated Proteins.” BMC Bioinformatics 13, no. 1 (March 16, 2012): 40. https://doi.org/10.1186/1471-2105-13-40.
Tung, Chun-Wei, and Shinn-Ying Ho. “Computational Identification of Ubiquitylation Sites from Protein Sequences.” BMC Bioinformatics 9 (2008): 310. https://doi.org/10.1186/1471-2105-9-310.
———. “POPI: Predicting Immunogenicity of MHC Class I Binding Peptides by Mining Informative Physicochemical Properties.” Bioinformatics (Oxford, England) 23, no. 8 (April 15, 2007): 942–49. https://doi.org/10.1093/bioinformatics/btm061.
Tung, Chun-Wei, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, and Shinn-Ying Ho. “POPISK: T-Cell Reactivity Prediction Using Support Vector Machines and String Kernels.” BMC Bioinformatics 12, no. 1 (November 15, 2011): 446. https://doi.org/10.1186/1471-2105-12-446.

Conference Papers

“2007-Mining Physicochemical Properties for Predicting Immunogenicity of MHC Class II Binding Peptides.Pdf,” n.d.
“2010-ChloroRF.Pdf,” n.d.
“2010-PPDT.Pdf,” n.d.
Hsu, Kai-Ti, Hui-Ling Huang, Chun-Wei Tung, Yi-Hsiung Chen, and Shinn-Ying Ho. Analysis of Physicochemical Properties on Prediction of R5, X4 and R5X4 HIV-1 Coreceptor Usage. Citeseer, 2009. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.193.3185&rep=rep1&type=pdf.
Huang, W. L., C. W. Tung, S. W. Ho, and S. Y. Ho. “ProLoc-RGO: Using Rule-Based Knowledge with Gene Ontology Terms for Prediction of Protein Subnuclear Localization.” In IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008. CIBCB’08, 201–6, 2008.
Huang, Wen-Lin, Chun-Wei Tung, and Shinn-Ying Ho. “Human Pol II Promoter Prediction by Using Nucleotide Property Composition Features.” In Proceedings of the International Symposium on Biocomputing, 22, 2010. http://dl.acm.org/citation.cfm?id=1722050.

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