Jenkins, S., P.W. Ayers, S.R. Kirk, P. Mori-Sánchez, and A. Martín Pendás. “Bond Metallicity of Materials from Real Space Charge Density Distributions.” Chemical Physics Letters 471, no. 1–3 (March 16, 2009): 174–77. doi:10.1016/j.cplett.2009.02.018.

Jenkins, S., S. R. Kirk, M. Persson, J. Carlen, and Z. Abbas. “Molecular Dynamics Simulation of Nanocolloidal Amorphous Silica Particles: Part I.” The Journal of Chemical Physics 127, no. 22 (December 14, 2007): 224711. doi:10.1063/1.2803897.

———. “Molecular Dynamics Simulation of Nanocolloidal Amorphous Silica Particles: Part II.” The Journal of Chemical Physics 128, no. 16 (April 28, 2008): 164711–10. doi:10.1063/1.2906462.

———. “Molecular Dynamics Simulation of Nanocolloidal Amorphous Silica Particles: Part III.” The Journal of Chemical Physics 130, no. 13 (April 7, 2009): 134702–13. doi:10.1063/1.3102957.

Jenkins, S., and S.R. Kirk. “Software Architecture Graphs as Complex Networks: A Novel Partitioning Scheme to Measure Stability and Evolution.” Information Sciences 177, no. 12 (2007): 2587–2601. doi:10.1016/j.ins.2007.01.021.

Jenkins, S., S.R. Kirk, M. Persson, J. Carlen, and Z. Abbas. “The Role of Hydrogen Bonding in Nanocolloidal Amorphous Silica Particles in Electrolyte Solutions.” Journal of Colloid and Interface Science 339, no. 2 (November 2009): 351–61. doi:10.1016/j.jcis.2009.07.069.

Jenkins, Samantha. “Quantum Topology Phase Diagrams for Molecules, Clusters, and Solids.” International Journal of Quantum Chemistry 113, no. 11 (June 5, 2013): 1603–8. doi:10.1002/qua.24398.

Jenkins, Samantha, and Steven R. Kirk. “An Investigation of the Merging and Collapsing of Software Networks.” Advances in Complex Systems 10, no. 3 (2007): 379–93. doi:10.1142/S0219525907001173.

Jenkins, Samantha, Steven R. Kirk, and Paul W. Ayers. “Topological Transitions between Ice Phases.” In Physics and Chemistry of Ice, edited by Werner F. Kuhs, 249–56. Bremerhaven, Germany: Royal Society of Chemistry, 2006. doi:10.1039/9781847557773.

Jenkins, Samantha, Steven R. Kirk, Alfredo Guevara-García, Paul W. Ayers, Eleonora Echegaray, and Alejandro Toro-Labbe. “Electronic Stress as a Guiding Force for Chemical Bonding.” In Electronic Effects in Organic Chemistry, edited by R. Kirchner, 1–22. Topics in Current Chemistry, ISSN 0340-1022. Springer Berlin Heidelberg, 2011. http://link.springer.com/chapter/10.1007%2F128_2011_193.

Jenkins, Samantha, Chunying Rong, Steven R. Kirk, Dulin Yin, and Shubin Liu. “Spanning Set of Silica Cluster Isomer Topologies from QTAIM.” The Journal of Physical Chemistry A 115, no. 45 (May 10, 2011): 12503–11. doi:10.1021/jp202294n.

Kirk, S.R., Dulin Yin, M. Persson, J. Carlen, and S. Jenkins. “Molecular Dynamics Simulations of the Aggregation of Nanocolloidal Amorphous Silica Monomers and Dimers.” Procedia Engineering 18 (2011): 188–93. doi:10.1016/j.proeng.2011.11.030.

Kirk, Steven R., and Samantha Jenkins. “Information Theory-Based Software Metrics and Obfuscation.” Journal of Systems and Software 72, no. 2 (July 2004): 179–86. doi:10.1016/S0164-1212(03)00217-6.

Kirk, Steven Robert. “The ‘Red Ink’ Effect - How Does Written Feedback Affect the Scientific Writing Skills of Science Students?” Pedagogical Papers Series (IT University of Goteborg), Pedagogical Paper Series, 3, no. 4 (Winter 2009). https://document.chalmers.se/download?docid=1814546738.

Maza, Julio R., Samantha Jenkins, Steven R. Kirk, James S. M. Anderson, and Paul W. Ayers. “The Ehrenfest Force Topology: A Physically Intuitive Approach for Analyzing Chemical Interactions.” Physical Chemistry Chemical Physics 15, no. 41 (September 17, 2013): 17823–36. doi:10.1039/C3CP52687A.

Xu, Chang, Steven R. Kirk, and Samantha Jenkins. “Tiling for Performance Tuning on Different  Models of GPUs.” In ISISE ’09 Proceedings of the 2009 Second International Symposium on Information Science and Engineering, 500–504. Shanghai, China: IEEE Computer Society Washington, DC, USA, 2009. doi:10.1109/ISISE.2009.60.

Xu, Tianlv, Samantha Jenkins, Chen-Xia Xiao, Julio R. Maza, and Steven R. Kirk. “The Pt Site Reactivity of the Molecular Graphs of Au6Pt Isomers.” Chemical Physics Letters 590 (December 18, 2013): 41–45. doi:10.1016/j.cplett.2013.10.059.

Zhang, Chao, Zaihui Fu, Baohua Dai, Shunqin Zen, Yachun Liu, Qiong Xu, Steven Robert Kirk, and Dulin Yin. “Chlorocuprate Ionic Liquid Functionalized Biochar Sulfonic Acid as an Efficiently Biomimetic Catalyst for Direct Hydrolysis of Bamboo under Microwave Irradiation.” Industrial & Engineering Chemistry Research 52, no. 33 (August 21, 2013): 11537–43. doi:10.1021/ie401100x.

Zhang, Chao, Zaihui Fu, Ya Chun Liu, Baohua Dai, Yanhong Zou, Xinglang Gong, Yanlong Wang, et al. “Ionic Liquid-Functionalized Biochar Sulfonic Acid as a Biomimetic Catalyst for Hydrolysis of Cellulose and Bamboo under Microwave Irradiation.” Green Chemistry 14, no. 7 (July 1, 2012): 1928–34. doi:10.1039/C2GC35071H.

Zhao, Dong-Bo, Chun-Ying Rong, Samantha Jenkins, Steven  R. Kirk, Du-Lin Yin, and Shu-Bin Liu. “Origin of the Cis-Effect: A Density Functional Theory Study of Doubly Substituted Ethylenes.” Acta Physico-Chimica Sinica 29, no. 01 (2012): 43–54. doi:10.3866/PKU.WHXB201211121.

Zhong, Wenzhou, Steven Robert Kirk, Dulin Yin, Yongqiang Li, Rong Zou, Liqiu Mao, and Gouqiang Zou. “Solvent-Free Selective Oxidation of Toluene by Oxygen over MnOx/SBA-15 Catalysts: Relationship between Catalytic Behavior and Surface Structure.” Chemical Engineering Journal 280 (November 15, 2015): 737–47. doi:10.1016/j.cej.2015.06.051.

Zhong, Wenzhou, Liqiu Mao, Wenjun Yi, Steven Robert Kirk, Dulin Yin, Anmin Zheng, and Hean Luo. “New Non-Metallic Mesoporous SBA-15 Catalyst with High Selectivity for the Gas-Phase Oxidation of Cyclohexylamine to Cyclohexanone Oxime.” Catalysis Communications 56, no. 0 (November 5, 2014): 148–52. doi:10.1016/j.catcom.2014.06.030.

Zou, Guoqiang, Wenzhou Zhong, Qiong Xu, Jiafu Xiao, Chang Liu, Yongqiang Li, Liqiu Mao, Steven Kirk, and Dulin Yin. “Oxidation of Cyclohexane to Adipic Acid Catalyzed by Mn-Doped Titanosilicate with Hollow Structure.” Catalysis Communications 58 (January 5, 2015): 46–52. doi:10.1016/j.catcom.2014.08.026.