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Matthew Jones : Curriculum Vitae

Publications

[1]
Stephanie E Hampton et al., “The Tao of Open Science for Ecology,” 2014.
[2]
E. Borer, E. Seabloom, M. B. Jones, and M. Schildhauer, “Some Simple Guidelines for Effective Data Management,” Bulletin of the Ecological Society of America, vol. 90, pp. 205–214, 2009.
[3]
O. J. Reichman, M. B. Jones, and M. P. Schildhauer, “Challenges and opportunities of open data in ecology.,” Science (New York, N.Y.), vol. 331, no. 6018, pp. 703–5, Feb. 2011.
[4]
C. Berkley, S. Bowers, M. B. Jones, J. S. Madin, and M. Schildhauer, “Improving Data Discovery in Metadata Repositories through Semantic Search,” in Proceedings of iSEEK’09, 2009.
[5]
S. Bowers, H. Cao, M. Schildhauer, M. Jones, B. Leinfelder, and M. O’Brien, “A semantic annotation framework for retrieving and analyzing observational datasets,” in Proceedings of the third workshop on Exploiting semantic annotations in information retrieval - ESAIR ’10, New York, New York, USA, 2010, p. 31.
[6]
B. Leinfelder, S. Bowers, M. O’Brien, M. B. Jones, and M. Schildhauer., “Using Semantic Metadata for Discovery and Integration of Heterogeneous Ecological Data,” in Proceedings of the Environmental Information Management Conference (EIM 2011), Santa Barbara, CA, 2011, pp. 92–97.
[7]
J. Kruger, M. Jones, M. Schildhauer, and N. Stevens, “New technologies for automating the management and analysis of conservation data,” Ecological Circuits, vol. 1, pp. 5–8, 2008.
[8]
W. K. Michener and M. B. Jones, “Ecoinformatics: supporting ecology as a data-intensive science,” Trends in Ecology & Evolution, vol. 27, no. 2, pp. 85–93, Jan. 2012.
[9]
D. Barseghian et al., “Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis,” Ecological Informatics, vol. 5, no. 1, pp. 42–50, Jan. 2010.
[10]
P. H. McCartney and M. B. Jones, “Using XML-encoded Metadata as a Basis for Advanced Information Systems for Ecological Research,” in Proceedings of the 2002 System Cybernetics and Informatics Conference, 2002.
[11]
R. Nottrott, M. B. Jones, and M. Schildhauer, “Using XML-structured metadata to automate quality assurance processing for ecological data,” in Proceedings of the Third IEEE Computer Society Metadata Conference, Bethesda, MD, 1999.
[12]
D. R. Peart, N. J. Poage, and M. B. Jones, “Winter injury to subalpine red spruce: influence of prior vigor and effects on subsequent growth,” Canadian Journal of Forest Research, vol. 22, no. 6, pp. 888–892, 1992.
[13]
M. B. Jones, “Web-based Data Management,” in Data and Information Management in the Ecological Sciences: A Resource Guide, W. K. Michener, J. H. Porter, and S. G. Stafford, Eds. Albuquerque, New Mexico: LTER Network Office, University of New Mexico, 1998.
[14]
D. R. Peart, M. B. Jones, and P. A. Palmiotto, “Winter injury to red spruce at Mt. Moosilauke, New Hampshire,” Canadian Journal of Forest Research, vol. 21, no. 9, pp. 1380–1389, 1991.
[15]
D. Barseghian, D. Crawl, M. B. Jones, I. Altintas, J. Tao, and S. Riddle, “Sensor lifecycle management using scientific workflows,” in Proceedings of the Environmental Information Management Conference (EIM 2011), 2011, pp. 33–38.
[16]
B. Ludaescher et al., “Scientific Process Automation and Workflow Management,” in Scientific Data Management: Challenges, Technology, and Deployment, A. Shoshani and D. Rotem, Eds. Chapman & Hall/CRC, 2009.
[17]
B. Leinfelder et al., “Using metadata for loading and querying heterogeneous scientific data,” in Proceedings of Environmental Information Management Conference 2008, Albuquerque, NM, 2008, pp. 90–95.
[18]
M. B. Jones, M. P. Schildhauer, O. J. Reichman, and S. Bowers, “The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere,” Annual Review of Ecology, Evolution, and Systematics, vol. 37, no. 1, pp. 519–544, Dec. 2006.
[19]
B. Ludäscher et al., “Scientific workflow management and the Kepler system,” Concurrency and Computation: Practice and Experience, vol. 18, no. 10, pp. 1039–1065, Aug. 2006.
[20]
M. B. Jones and C. Gries, Eds., “Proceedings of the Environmental Information Management Conference (EIM 2011),” in Proceedings of the Environmental Information Management Conference (EIM 2011), Santa Barbara, 2011, pp. 1–175.
[21]
C. Berkley, M. Jones, J. Bojilova, and D. Higgins, “Metacat: a Schema-IndependentXML Database System,” in Proceedings of the Thirteenth International Conference on Scientific and Statistical Database Management, SSDBM 2001., 2001, pp. 171–179.
[22]
M. B. Jones, C. Berkley, J. Bojilova, and M. Schildhauer, “Managing scientific metadata,” IEEE Internet Computing, vol. 5, no. 5, pp. 59–68, 2001.
[23]
A. Frondorf, M. B. Jones, and S. Stitt., “Linking the FGDC geospatial metadata content standard to the biological/ecological sciences,” in Proceedings of the Third IEEE Computer Society Metadata Conference, Bethesda, MD, 1999.
[24]
J. Cushing, K. Vanderbilt, J. Brunt, A. Gupta, M. Jones, and P. McCartney, “NSF Long Term Ecological Research Sites – Praxis et Theoria,” in Proceedings of the 17th International Conference on Scientific and Statistical Database Management, 2005, pp. 303–306.
[25]
D. Higgins, C. Berkley, and M. B. Jones, “Managing Heterogeneous Ecological Data Using Morpho,” in Proceedings of the 14th International Conference on Scientific and Statistical Database Management (SSDBM’02), 2002, pp. 69 – 76.
[26]
M. B. Jones, “Meta-information systems and ontologies A special feature from ISEI’06,” Ecological Informatics, vol. 2, no. 3, pp. 193–194, 2007.
[27]
E. H. Fegraus, S. Andelman, M. B. Jones, and M. Schildhauer, “Maximizing the Value of Ecological Data with Structured Metadata: An Introduction to Ecological Metadata Language (EML) and Principles for Metadata Creation,” Bulletin of the Ecological Society of America, pp. 158–168, 2005.
[28]
C. Gries and M. B. Jones, Eds., “Proceedings of Environmental Information Management Conference 2008,” in Proceedings of Environmental Information Management Conference 2008, Albuquerque, NM, 2008, p. 192.
[29]
I. Altintas, C. Berkley, E. Jaeger, M. Jones, B. Ludäscher, and S. Mock, “Kepler: An Extensible System for Design and Execution of Scientific Workflows,” in Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM’04), 2004.
[30]
C. Berkley, S. Bowers, M. B. Jones, B. Ludaescher, M. Schildhauer, and J. Tao, “Incorporating Semantics in Scientific Workflow Authoring,” in Proceedings of the 17th International Conference on Scientific and Statistical Database Management, Santa Barbara, CA, 2005, pp. 75–78.
[31]
N. C. Dexter, J. W. Cobb, D. Vieglais, M. B. Jones, and M. Lowe, “DataONE member node pilot integration with TeraGrid?,” in Proceedings of the 2011 TeraGrid Conference on Extreme Digital Discovery - TG ’11, New York, New York, USA, 2011, p. 1.
[32]
D. Pennington, D. Higgins, A. Peterson, M. B. Jones, B. Ludaescher, and S. Bowers, “Ecological Niche Modeling Using the Kepler Workflow System,” in Workflows for e-Science: Scientific Workflows for Grids, I. J. Taylor, E. Deelman, D. B. Gannon, and M. Shields, Eds. Springer, 2007, pp. 91–108.
[33]
W. Michener et al., “Data Integration and Workflow Solutions for Ecology,” Lecture Notes in Computer Science, vol. 3615, pp. 321–324, 2005.
[34]
M. Jones, C. Folt, and S. Guarda, “Characterizing Individual, Population and Community Effects of Sublethal Levels of Aquatic Toxicants - an Experimental Case-Study Using Daphnia,” Freshwater Biology, vol. 26, no. 1, pp. 35–44, 1991.
[35]
E. C. Gries, A. Rodrigo, M. B. Jones, and D. Vieglais, “Cyberinfrastructure and the NSF Dimensions of Biodiversity Program Solicitation Planning for Success,” 2010.
[36]
J. S. Madin, S. Bowers, M. P. Schildhauer, and M. B. Jones, “Advancing ecological research with ontologies.,” Trends in Ecology & Evolution, vol. 23, no. 3, pp. 159–68, Mar. 2008.
[37]
S. Romanello et al., “Creating and Providing Data Management Services for the Biological and Ecological Sciences: Science Environment for Ecological Knowledge,” in Proceedings of the 17th International Conference on Scientific and Statistical Database Management, 2005, pp. 28–31.
[38]
C. Jones, C. Blanchette, M. Brooke, J. Harris, M. Jones, and M. Schildhauer, “A metadata-driven framework for generating field data entry interfaces in ecology,” Ecological Informatics, vol. 2, no. 3, pp. 270–278, Oct. 2007.
[39]
M. Urban-Lurain et al., “An Assessment Database for Supporting Educational Research,” in 2009 39th IEEE Frontiers in Education Conference, San Antonio, TX, 2009, pp. M2J–1–6.
[40]
B. Leinfelder et al., “A metadata-driven approach to loading and querying heterogeneous scientific data,” Ecological Informatics, vol. 5, no. 1, pp. 3–8, Jan. 2010.
[41]
J. Wang et al., “Accelerating Parameter Sweep Workflows by Utilizing Ad-hoc Network Computing Resources: An Ecological Example,” 2009 Congress on Services - I, pp. 267–274, Jul. 2009.
[42]
J. Wang, I. Altintas, C. Berkley, L. Gilbert, and M. B. Jones, “A High-Level Distributed Execution Framework for Scientific Workflows,” 2008 IEEE Fourth International Conference on eScience, pp. 634–639, Dec. 2008.
[43]
D. Barseghian, I. Altintas, and M. B. Jones, “Accessing and using sensor data within the Kepler scientific workflow system,” in Proceedings of Environmental Information Management Conference 2008, Albuquerque, NM, 2008, pp. 26–32.
[44]
W. K. Michener et al., “A knowledge environment for the biodiversity and ecological sciences,” Journal of Intelligent Information Systems, vol. 29, no. 1, pp. 111–126, Jan. 2007.
[45]
M. B. Jones and C. Gries, “Advances in environmental information management,” Ecological Informatics, vol. 5, no. 1, pp. 1–2, Jan. 2010.

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