Ahmed, Amr, Andrew Arnold, Luis Pedro Coelho, Joshua Kangas, Abdul-Saboor Sheikh, Eric Xing, William Cohen, and Robert F. Murphy. “Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature.” Web Semantics: Science, Services and Agents on the World Wide Web 8, no. 2–3 (July 2010): 151–54. doi:10.1016/j.websem.2010.04.002.

Chebira, A., L.P. Coelho, A. Sandryhaila, S. Lin, W.G. Jenkinson, J. MacSleyne, C. Hoffman, et al. “An Adaptive Multiresolution Approach to Fingerprint Recognition.” In IEEE International Conference on Image Processing, 2007. ICIP 2007, 1:I – 457 – I – 460, 2007. doi:10.1109/ICIP.2007.4378990.

Coelho, L.P., A. Shariff, and R.F. Murphy. “Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms.” In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI ’09, 518–21, 2009. doi:10.1109/ISBI.2009.5193098.

Coelho, Luis Pedro. “Mahotas: Open Source Software for Scriptable Computer Vision.” Journal of Open Research Software 1, no. 1 (July 29, 2013). doi:10.5334/jors.ac.

Coelho, Luis Pedro, Estelle Glory-Afshar, Joshua Kangas, Shannon Quinn, Aabid Shariff, and Robert F. Murphy. “Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns.” In Linking Literature, Information, and Knowledge for Biology, edited by Christian Blaschke and Hagit Shatkay, 8–18. Lecture Notes in Computer Science 6004. Springer Berlin Heidelberg, 2010. http://link.springer.com/chapter/10.1007/978-3-642-13131-8_2.

Coelho, Luis Pedro, Joshua D. Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, and Robert F. Murphy. “Determining the Subcellular Location of New Proteins from Microscope Images Using Local Features.” Bioinformatics, July 8, 2013. doi:10.1093/bioinformatics/btt392.

Coelho, Luis Pedro, Tao Peng, and Robert F. Murphy. “Quantifying the Distribution of Probes between Subcellular Locations Using Unsupervised Pattern Unmixing.” Bioinformatics 26, no. 12 (6–15, 2010): i7–12. doi:10.1093/bioinformatics/btq220.

Coelho, Luís Pedro, and Arlindo L. Oliveira. “Dotted Suffix Trees A Structure for Approximate Text Indexing.” In String Processing and Information Retrieval, edited by Fabio Crestani, Paolo Ferragina, and Mark Sanderson, 329–36. Lecture Notes in Computer Science 4209. Springer Berlin Heidelberg, 2006. http://link.springer.com/chapter/10.1007/11880561_27.

Shariff, Aabid, Joshua Kangas, Luis Pedro Coelho, Shannon Quinn, and Robert F. Murphy. “Automated Image Analysis for High-Content Screening and Analysis.” Journal of Biomolecular Screening 15, no. 7 (August 1, 2010): 726–34. doi:10.1177/1087057110370894.

Sunagawa, Shinichi, Luis Pedro Coelho, Samuel Chaffron, Jens Roat Kultima, Karine Labadie, Guillem Salazar, Bardya Djahanschiri, et al. “Structure and Function of the Global Ocean Microbiome.” Science 348, no. 6237 (5–22, 2015): 1261359. doi:10.1126/science.1261359.

Sunagawa, Shinichi, Daniel R. Mende, Georg Zeller, Fernando Izquierdo-Carrasco, Simon A. Berger, Jens Roat Kultima, Luis Pedro Coelho, et al. “Metagenomic Species Profiling Using Universal Phylogenetic Marker Genes.” Nature Methods advance online publication (October 20, 2013). doi:10.1038/nmeth.2693.