Kirmitzoglou, I., & Promponas, V. J. (2015). LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences. Bioinformatics, btv115. https://doi.org/10.1093/bioinformatics/btv115

Kannas, C. C., Kalvari, I., Lambrinidis, G., Neophytou, C. M., Savva, C. G., Kirmitzoglou, I., … Pattichis, C. S. (2015). LiSIs: An Online Scientific Workflow System for Virtual Screening. Combinatorial Chemistry & High Throughput Screening.

Giraldo-Calderón, G. I., Emrich, S. J., MacCallum, R. M., Maslen, G., Dialynas, E., Topalis, P., … Lawson, D. (2015). VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic Acids Research, 43(Database issue), D707–713. https://doi.org/10.1093/nar/gku1117

Neafsey, D. E., Waterhouse, R. M., Abai, M. R., Aganezov, S. S., Alekseyev, M. A., Allen, J. E., … Besansky, N. J. (2014). Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes. Science, 1258522. https://doi.org/10.1126/science.1258522

Chrysos, G., Sotiriades, E., Rousopoulos, C., Pramataris, K., Papaefstathiou, I., Dollas, A., … Lagnel, J. (2014). Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms. IEEE Design Test, 31(1), 62–73. https://doi.org/10.1109/MDAT.2013.2284191

Papadopoulos, A., Kirmitzoglou, I., Promponas, V. J., & Theocharides, T. (2012). FPGA-based hardware acceleration for local complexity analysis of massive genomic data. Integration, the VLSI Journal. Retrieved from http://www.sciencedirect.com/science/article/pii/S0167926012000697

Arvanitidis, C., Valavanis, V. D., Eleftheriou, A., Costello, M. J., Faulwetter, S., Gotsis, P., … Petrov, A. (2006). MedOBIS: biogeographic information system for the eastern Mediterranean and Black Sea. Marine Ecology Progress Series, 316, 225–230. Retrieved from http://www.marbigen.org/sites/default/files/Arvanitidis%20et%20al.%20-%202006%20-%20MedOBIS%20biogeographic%20information%20system%20for%20the%20eastern%20Mediterranean%20and%20Black%20Sea.pdf

Kitsos, M.-S., Christodoulou, M., Arvanitidis, C., Mavidis, M., Kirmitzoglou, I., & Koukouras, A. (2005). Composition of the organismic assemblage associated with Caretta caretta. JMBA-Journal of the Marine Biological Association of the United Kingdom, 85(2), 257–262. Retrieved from http://journals.cambridge.org/production/action/cjoGetFulltext?fulltextid=292187

Mavidis, M., Aplikioti, M., Kirmitzoglou, I., & Koukouras, A. (2005). The Euphausiacean fauna (Malacostraca) of the Aegean sea, and comparison with those of the neighbouring seas. Crustaceana, 78(1), 19–27. Retrieved from http://www.springerlink.com/index/H616473621704XP0.pdf

Papadopoulos, A., Kirmitzoglou, I., Promponas, V. J., & Theocharides, T. (2013). GPU technology as a platform for accelerating local complexity analysis of protein sequences. In 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (pp. 2684–2687). https://doi.org/10.1109/EMBC.2013.6610093

Kannas, C. C., Achilleos, K. G., Antoniou, Z., Nicolaou, C. A., Pattichis, C. S., Kalvari, I., … Promponas, V. J. (2012). A workflow system for virtual screening in cancer chemoprevention. In 2012 IEEE 12th International Conference on Bioinformatics Bioengineering (BIBE) (pp. 439–446). https://doi.org/10.1109/BIBE.2012.6399766

Chrysos, G., Sotiriades, E., Rousopoulos, C., Dollas, A., Papadopoulos, A., Kirmitzoglou, I., … Lagnel, J. (2012). Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. In 2012 IEEE 12th International Conference on Bioinformatics Bioengineering (BIBE) (pp. 559–565). https://doi.org/10.1109/BIBE.2012.6399733

Nikolaou, N., Sampaziotis, P., Aplikioti, M., Drakos, A., Kirmitzoglou, I., Argyrou, M., … Promponas, V. J. (2010). VeSTIS: A Versatile Semi- Automatic Taxon Identification System from Digital Images. In P. G. Nimis & R. G. Lebbe (Eds.), Tools for Identifying Biodiversity: Progress and Problems. Proceedings of the International Congress, Paris, (pp. 231–236). Paris, France: EUT Edizioni Università di Trieste. Retrieved from http://www.openstarts.units.it/dspace/handle/10077/3782

Koukouras, A., Kitsos, M. S., Kirmitzoglou, I., & Chartosia, N. (2004). Development of an updating information system on Decapoda Crustacea museum collections, useful in education and scientific research. In M. J. Costello & P. Pissierssens (Eds.), Proceedings Ocean Biodiversity Informatics: International Conference on Marine Biodiversity Data Management, Hamburg, Germany 29 November to 1 December, 2004 (Vol. 37, p. 192). BSH/UNESCO/IOC/VLIZ. Retrieved from http://vliz.be/imis/imis.php?module=ref&refid=107210

Kitsos, M.-S., Christodoulou, M., Arvanitidis, C., Mavidis, M., Kirmitzoglou, I., & Koukouras, A. (n.d.). Composition of the epibiotic assemblage associated with Caretta caretta (Linnaeus, 1758). In 37th CIESM Congress Proceedings (Vol. 37, p. 529).

Kalvari, I., Lamprinidis, G., Kirmitzoglou, I., Kannas, C. C., Achilleos, K. G., Antoniou, Z., … Promponas, V. J. (2013, July). Enabling docking-based virtual screening within the GRANATUM-LiSIs platform. Presented at the 21st Annual International Conference on Intelligent Systems for Molecular Biology, Berlin, Germany.

Kirmitzoglou, I. (2013a, July). GRANATUM-LISIs: Making complex in silico predictive models accessible to wet biologists. Presented at the 21st Annual International Conference on Intelligent Systems for Molecular Biology, Berlin, Germany.

Kirmitzoglou, I. (2013b, July). Identifying pathogenic strains of Escherichia based on local and global amino acid compositional genome signatures. Presented at the 21st Annual International Conference on Intelligent Systems for Molecular Biology, Berlin, Germany.

Kannas, C. C., Achilleos, K. G., Antoniou, Z., Kalvari, I., Kirmitzoglou, I., Nicolaou, C. A., … Pattichis, C. S. (2013, July). LiSIs: An Online Scientific Workflow System for Life Sciences Research. Presented at the 6th Joint Sheffield Conference on Chemoinformatics, Sheffield, UK.

Neophytou, C., Savva, C., Promponas, V. J., Kalvari, I., Kannas, C., Kirmitzoglou, I., … Constantinou, A. (2013, March). Application of computational modeling for identifying promising agents to control breast cancer. Presented at the 13th International Breast Cancer Conference, St Gallen Switzerland.

Kannas, C. C., Kalvari, I., Kirmitzoglou, I., Antoniou, Z., Achilleos, K. G., Neophytou, C. M., … Pattichis, C. S. (2013). LiSIs: A Galaxy-based platform for Life Sciences Informatics Research. Presented at the Galaxy Community Conference 2013, Oslo, Norway.

Kannas, C. C., Achilleos, K. G., Antoniou, Z., Nicolaou, C. A., Pattichis, C. S., Neophytou, C. M., … Promponas, V. J. (2012, October). GRANATUM-LISIs: Making complex in silico predictive models accessible to wet biologists. Presented at the 7th Conference of the Hellenic Society for Computational Biology & Bioinformatics, Heraclion, Greece.

Neophytou, C., Savva, C., Promponas, V., Kalvari, I., Kannas, C., Kirmitzoglou, I., … Constantinou, A. (2012, October). An interdisciplinary computational and systems biology approach for the selection of cancer chemoprevention agents. Presented at the 5th International Congress on Nutrition and Cancer, Elazig, Turkey.

Tamana, S., Kirmitzoglou, I., & Promponas, V. J. (2011, July). Accessibility of Compositionally Biased Regions in PDB structures. Presented at the 19th International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology, Vienna, Austria.

Xenophontos, M., Theodosiou, A., Kirmitzoglou, I., & Promponas, V. J. (2011, July). Evaluation of transmembrane helix (TMH) packing prediction methods on successive in sequence TMHs. Presented at the 19th International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology, Vienna, Austria.

Nikolaou, N., Sampaziotis, P., Aplikioti, M., Drakos, A., Kirmitzoglou, I., Argyrou, M., … Promponas, V. J. (2010, October). An Open Source system for semi-automatic species identification from digital images. Presented at the In the 5th Conference of the Hellenic Society for Computational Biology, Alexandroupolis, Greece.

Kirmitzoglou, I., & Promponas, V. J. (2009, June). On the quality of established datasets for benchmarking sequence database search and low-complexity handling tools: the ASTRAL compendium test case. Presented at the 17th International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology, Stockholm, Sweden.

Kirmitzoglou, I., & Promponas, V. J. (2008, October). Effects of different masking strategies on protein sequence database searches with BLASTP. Presented at the 3rd Conference of the Hellenic Society for Computational Biology, CERTH, Thessaloniki, Greece.

Kirmitzoglou, I., Mytilineou, E., & Promponas, V. J. (2008, October). Local compositional extremes in protein sequences: definitions, algorithms and biological relevance. Presented at the 3rd Conference of the Hellenic Society for Computational Biology, CERTH, Thessaloniki, Greece.

Kirmitzoglou, I., & Promponas, V. J. (2007a, July). Effects of different masking strategies on protein sequence database searches with BLASTP. Presented at the 15th International Conference on Intelligent Systems for Molecular Biology and 6th European Conference on Computational Biology, Vienna, Austria.

Mytilineou, E., Kirmitzoglou, I., & Promponas, V. J. (2007). Comparative analysis of compositionally biased regions of two complete plant proteomes. In Proceedings of the 29th Annual Meeting of the Hellenic Society for Biological Sciences. Kavala, Greece.

Kirmitzoglou, I., & Promponas, V. J. (2007b). Effects of different masking strategies on protein sequence database searches with BLASTP. In Proceedings of the 29th Annual Meeting of the Hellenic Society for Biological Sciences. Kavala, Greece.

Kirmitzoglou, I., Kitsos, M. S., Thessalou-Legaki, M., Tselepides, A., & Koukouras, A. (2006). Investigation of the progress and possible expansion of the limits of the lessepsian migratory current regarding Decapoda (Crustacea). In 10th International Congress on the Zoogeography and Ecology of Greece and adjacent regions (p. 51). Patra, Greece. Retrieved from http://elnais.ath.hcmr.gr/PDF/Kimitzoglou%20et%20al,%202005.pdf

Kirmitzoglou, I. (2005, October). Investigation of the progress and expansion of the limits of the lessepsian migratory current regarding Decapoda και Stomatopoda Crustacea (in Greek). Presented at the 12th Pan-Hellenic Congress of Ichthyologists, Drama, Greece.

Tzomos, T., Chartosia, N., Karani, I., Kirmitzoglou, I., & Tselepides, A. (2003, May). Stomach content of the bathyal shrimp Aristeus antennatus (Risso, 1816) (Decapoda, Aristeidae) from the Southern Aegean Sea. Presented at the 25th EEBE Congress, Mitilini, Greeece.

Anastasiadou, C., Koukouras, A., Chartosia, N., Mavidis, M., Kitsos, M.-S., & Kirmitzoglou, I. (2001, September). Contribution to the study of the geographical distribution of Palaemonetes species in Europe and neighbouring areas. Presented at the 8th Colloquium Crustacea Decapoda Mediterranea, Corfu, Greece.

Kirmitzoglou, I., Kitsos, M.-S., Mavidis, M., Anastasiadou, M. C., Chartosia, N., Karani, I., … Koukouras, A. (2001, September). Presentation of the Decapoda Crustacea collections of the Zoological Museum of Aristoteleio University of Thessaloniki (A.U.Th) and the means of acquiring the relevant information through the Internet. Presented at the 8th Colloquium Crustacea Decapoda Mediterranea, Corfu, Greece.

Karani, I., Koukouras, A., Mavides, M., Anastasiadou, C., Kirmitzoglou, I., & Tzomos, T. (2001, September). Variability of morphological features of Palaemon species from the Greek coast. Presented at the 8th Colloquium Crustacea Decapoda Mediterranea, Corf.

Kirmitzoglou, I., Kitsos, M.-S., Mavidis, M., Vafidis, D., Tselepides, A., Anastasiadou, C., … Koukouras, A. (2001, September). Vertical distribution of the Decapoda Crustacea in the Aegean Sea, as it results from the computerization of the Zoological Museum (A.U.Th) collections. Presented at the 8th Colloquium Crustacea Decapoda Mediterranea, Corfu, Greece.

Kirmitzoglou, I., Mavidis, M., & Koukouras, A. (2001, May). Itemization and computerization of Zoological Museum material for use over the internet. Presented at the 23th EEBE Congress, Chios, Greece.

Mavidis, M., Koukouras, A., & Kirmitzoglou, I. (2001, May). Record of employment sectors of graduate biologists and investigation of the reasons for their distribution to the employment sectors. Presented at the 23th EEBE Congress, Chios, Greece.