cpbotha : Curriculum Vitae

Publications

[1]
H. Pfister et al., “Visualization in connectomics,” in Scientific Visualization, Springer London, 2014, pp. 221–245.
[2]
C. P. Botha, B. Preim, A. E. Kaufman, S. Takahashi, and A. Ynnerman, “From individual to population: challenges in medical visualization,” in Scientific Visualization, Springer London, 2014, pp. 265–282.
[3]
N. N. Smit, B. K. Haneveld, M. Staring, E. Eisemann, C. P. Botha, and A. Vilanova, “RegistrationShop: An Interactive 3D Medical Volume Registration System.,” in VCBM, 2014, pp. 145–153.
[4]
O. Dzyubachyk et al., “Interactive Local Super-Resolution Reconstruction of Whole-Body MRI Mouse Data: A Pilot Study with Applications to Bone and Kidney Metastases,” PLOS ONE, vol. 9, no. 9, p. e108730, Sep. 2014.
[5]
B. van Lew, C. P. Botha, J. R. Milles, H. A. Vrooman, M. van de Giessen, and B. P. F. Lelieveldt, “Interactive analysis of geographically distributed population imaging data collections over light-path data networks,” 2015, vol. 9418, pp. 941806–941806–9.
[6]
D. F. Malan et al., “A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection,” Int J CARS, vol. 11, no. 2, pp. 281–296, Aug. 2015.
[7]
G. J. Hötte, P. J. Schaafsma, C. P. Botha, P. A. Wielopolski, and H. J. Simonsz, “Visualization of Sliding and Deformation of Orbital Fat During Eye Rotation,” Translational Vision Science & Technology, vol. 5, no. 4, p. 9, Jul. 2016.
[8]
C. P. Botha, “An On-Line Machine Vision Flotation Froth Analysis Platform,” University of Stellenbosch, 1999.
[9]
B. Preim and C. Botha, Visual Computing for Medicine, 2nd ed. Morgan Kaufmann, 2013.
[10]
A. C. Kraima et al., “Toward a highly-detailed 3D pelvic model: Approaching an ultra-specific level for surgical simulation and anatomical education,” Clinical Anatomy, vol. 26, no. 3, pp. 333–338, 2013.
[11]
O. Dzyubachyk et al., “Comparative Exploration of Whole-Body MR through Locally Rigid Transforms,” International Journal of Computer Assisted Radiology and Surgery, 2013.
[12]
N. N. Smit, A. C. Kraima, M. DERUITER, D. JANSMA, and C. BOTHA, “The unified anatomical human (beta): Model-based representation of heterogeneous anatomical data,” in Workshop 3D Physiological Human (3DPH), CASA, 2012.
[13]
A. Khmelinskii et al., “Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach,” in Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 2012, pp. 1723–1726.
[14]
C. C. van Egmond, C. P. Botha, and B. C. Wünsche, “Design and evaluation of multifield visualisation techniques for 2D vector fields,” in Proceedings of the 27th Conference on Image and Vision Computing New Zealand, New York, NY, USA, 2012, pp. 115–120.
[15]
A. F. van Dixhoorn, J. Milles, B. van Lew, and C. P. Botha, “BrainCove: A Tool for Voxel-Wise fMRI Brain Connectivity Visualization,” in Proc. Eurographics Workshop on Visual Computing for Biology and Medicine, 2012, pp. 99–106.
[16]
C. P. Botha, B. Preim, A. Kaufman, S. Takahashi, and A. Ynnerman, “From individual to population: Challenges in Medical Visualization,” arXiv:1206.1148, Jun. 2012.
[17]
H. Pfister et al., “Visualization in Connectomics,” arXiv:1206.1428, Jun. 2012.
[18]
L. Zhao, C. P. Botha, J. O. Bescos, R. Truyen, F. M. Vos, and F. H. Post, “Lines of Curvature for Polyp Detection in Virtual Colonoscopy,” IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 5, pp. 885 –892, Sep.–Oct. 2006.
[19]
T. Kroes, F. H. Post, and C. P. Botha, “Exposure Render: An Interactive Photo-Realistic Volume Rendering Framework,” PLoS ONE, vol. 7, no. 7, p. e38586, Jul. 2012.
[20]
C. Godeschalk-Slagboom, R. van der Geest, K. Zeppenfeld, and C. Botha, “Cardiac MRI visualization for ventricular tachycardia ablation,” International Journal of Computer Assisted Radiology and Surgery, pp. 1–15, 2012.
[21]
D. F. Malan, C. P. Botha, and E. R. Valstar, “Voxel classification and graph cuts for automated segmentation of pathological periprosthetic hip anatomy,” International Journal of Computer Assisted Radiology and Surgery, vol. 8, pp. 63–74, 2013.
[22]
X. Zhang, J. Blaas, C. Botha, P. Reischig, A. Bravin, and J. Dik, “Process for the 3D virtual reconstruction of a microcultural heritage artifact obtained by synchrotron radiation CT technology using open source and free software,” Journal of Cultural Heritage, 2011.
[23]
S. Busking, C. P. Botha, and F. H. Post, “Example-based interactive illustration of multi-field datasets,” Computers & Graphics, vol. 34, no. 6, pp. 719–728, Dec. 2010.
[24]
K. Sihan et al., “Fully automated gating of optical coherence tomography data,” in Computing in Cardiology, 2010, 2010, pp. 9–12.
[25]
D. F. Malan et al., “Measuring femoral lesions despite CT metal artefacts: a cadaveric study,” Skeletal Radiology, vol. 41, no. 5, pp. 547–555, 2012.
[26]
F. V. Paulovich, D. M. Eler, J. Poco, C. P. Botha, R. Minghim, and L. G. Nonato, “Piecewise Laplacian‐based Projection for Interactive Data Exploration and Organization,” Computer Graphics Forum, vol. 30, no. 3, pp. 1091–1100, Jun. 2011.
[27]
S. Busking, C. P. Botha, L. Ferrarini, J. Milles, and F. H. Post, “Image-based rendering of intersecting surfaces for dynamic comparative visualization,” The Visual Computer, vol. 27, pp. 347–363, 2011.
[28]
K. Sihan et al., “Retrospective image-based gating of intracoronary optical coherence tomography: implications for quantitative analysis,” EuroIntervention, vol. 6, no. 9, pp. 1098–1103, Apr. 2011.
[29]
B. P. F. Lelieveldt et al., “Towards integrated analysis of longitudinal whole-body small animal imaging studies,” in IEEE ICASSP, 2011, pp. 5768–5771.
[30]
J. van Zwieten, C. P. Botha, B. Willekens, S. Schutte, F. H. Post, and H. J. Simonsz, “Digital 3D Reconstruction of Human Orbitae from High Resolution Serial Sections,” in Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting, 2005.
[31]
E. R. Valstar et al., “Towards computer-assisted surgery in shoulder joint replacement,” ISPRS Journal of Photogrammetry and Remote Sensing, vol. 56, no. 5–6, pp. 326–337, Aug. 2002.
[32]
R. Root et al., “Deformation of retrobulbar fat analysis with optical flow technique,” in Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting, 2005.
[33]
P. R. Krekel, C. P. Botha, E. R. Valstar, P. W. de Bruin, P. M. Rozing, and F. H. Post, “Interactive simulation and comparative visualisation of the bone-determined range of motion of the human shoulder,” in Proceedings of Simulation and Visualization, 2006, pp. 275–288.
[34]
P. Kok et al., “INTEGRIM: an image fusion tool for visualization and interpretation of micro-CT and multi-view BLI imaging,” Molecular Imaging (SMI 2006 special issue), 2006.
[35]
M. van der Glas, F. M. Vos, C. P. Botha, and A. M. Vossepoel, “Determination of Position and Radius of Ball Joints,” in Proceedings of the SPIE International Symposium on Medical Imaging, 2002, vol. 4684 - Image Processing, pp. 1571–1577.
[36]
C. P. Botha and F. H. Post, “Improved Perspective Visibility Ordering for Object-Order Volume Rendering,” The Visual Computer, vol. 21, no. 11, pp. 887–896, Oct. 2005.
[37]
C. P. Botha and F. H. Post, “New technique for transfer function specification in direct volume rendering using real-time visual feedback,” in Proceedings of the SPIE International Symposium on Medical Imaging, 2002, vol. 4681 - Visualization, Image-Guided Procedures, and Display.
[38]
C. P. Botha and F. H. Post, “ShellSplatting: Interactive Rendering of Anisotropic Volumes,” in Data Visualization 2003 (Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization), 2003, pp. 105–112.
[39]
C. P. Botha, D. M. Weber, M. van Olst, and D. W. Moolman, “A practical system for realtime on-plant flotation froth visual parameter extraction,” in Proceedings of IEEE Africon, 1999, pp. 103–106.
[40]
J. Blaas, C. P. Botha, and F. H. Post, “Interactive visualization of multi-field medical data using linked physical and feature-space views,” in Proc. Eurographics / IEEE-VGTC EuroVis, 2007, pp. 123–130.
[41]
J. Blaas, C. P. Botha, B. Peters, F. M. Vos, and F. H. Post, “Interactive Exploration of Connective Brain Structure through Diffusion Tensor Imaging,” in ASCI 2006 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging, 2006.
[42]
J. E. van Zwieten, C. P. Botha, B. Willekens, S. Schutte, F. H. Post, and H. J. Simonsz, “Digitisation and 3D reconstruction of 30 year old microscopic sections of human embryo, foetus and orbit,” in Image Analysis and Recognition, Proc. 3rd Intl. Conf. on Image Analysis and Recognition (ICIAR 2006), 2006, vol. LNCS 4142, pp. 636–647.
[43]
B. Vrolijk, C. P. Botha, and F. H. Post, “Fast extraction and rendering of isosurfaces from 4D data,” in ASCI 2004 - Proceedings of the 10th annual conference of the Advanced School for Computing and Imaging, 2004, pp. 281–290.
[44]
B. Vrolijk, C. P. Botha, and F. H. Post, “Fast Time-Dependent Isosurface Extraction and Rendering,” in Proceedings of the Spring Conference on Computer Graphics 2004, 2004, pp. 39–48.
[45]
P. R. Krekel, C. P. Botha, E. R. Valstar, P. W. de Bruin, P. M. Rozing, and F. H. Post, “Visualisation of gleno-humeral range of motion for shoulder arthroplasty,” in ASCI 2006 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging, 2006.
[46]
P. R. Krekel, C. P. Botha, F. H. Post, E. R. Valstar, and P. M. Rozing, “Pre-Operative Impingement Detection For Shoulder Arthroplasty,” in Proceedings of the International Shoulder Group, 2006.
[47]
S. C. Groot, R. Hamers, F. H. Post, C. P. Botha, and N. Bruining, “IVUS Simulation Based on Histopathology,” in Computers in Cardiology, 2006, pp. 681–684.
[48]
C. Coetzee, C. Botha, and D. Weber, “PC Based Number Plate Recognition System,” in Proceedings of IEEE International Symposium on Industrial Electronics, 1998, pp. 605–610.
[49]
C. P. Botha and F. H. Post, “A Visualisation Platform for Shoulder Replacement Surgery,” in Interactive Medical Image Visualization and Analysis (IMIVA) - Satellite Workshop of MICCAI 2001, 2001, pp. 61–64.
[50]
C. P. Botha and F. H. Post, “Interactive Previewing for Transfer Function Specification in Volume Rendering,” in Data Visualization 2002 (Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization), 2002.
[51]
C. P. Botha et al., “Time-varying three-dimensional vector field visualisation for the analysis of retrobulbar fat mobility during eye motion,” in ASCI 2005 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging, 2005, pp. 271–275.
[52]
J. Blaas, C. P. Botha, B. Peters, F. M. Vos, and F. H. Post, “Fast and reproducible fiber bundle selection in DTI visualization,” in Proceedings of IEEE Visualization 2005, 2005, pp. 59–64.
[53]
A. B. de Haan et al., “The prenatal development of the human orbit,” Strabismus, vol. 14, no. 1, pp. 51–56, Mar. 2006.
[54]
P. W. de Bruin, C. P. Botha, B. C. Stoel, E. R. Valstar, and P. M. Rozing, “Validation of navigated glenoid component Placement: an in-vitro pilot study,” in 19th Annual Symposium International Society for Technology in Arthroplasty (ISTA), 2006.
[55]
C. P. Botha, G. Kindlmann, W. J. Niessen, and B. Preim, Eds., Proceedings of the first Eurographics workshop on Visual Computing for Biomedicine. Eurographics Association, 2008.
[56]
D. Bartz, C. P. Botha, J. Hornegger, R. Machiraju, and B. Preim, Eds., “Proceedings of the second Eurographics workshop on Visual Computing for Biology and Medicine,” Leipzig, 2010, p. 140.
[57]
L. Zhao, C. P. Botha, R. Truyen, F. M. Vos, and F. H. Post, “Efficient Seeding and Defragmentation of Curvature Streamlines for Colonic Polyp Detection,” in Proceedings of SPIE Medical Imaging 2008, 2008, vol. 6916.
[58]
A. Van Dixhoorn, B. Vissers, L. Ferrarini, J. Milles, and C. P. Botha, “Visual analysis of integrated resting state functional brain connectivity and anatomy,” in Eurographics Workshop on Visual Computing for Biology and Medicine, 2010, pp. 57–64.
[59]
K. Sihan et al., “Fully automatic three-dimensional quantitative analysis of intracoronary optical coherence tomography: method and Validation.,” Catheter Cardiovasc Interv, vol. 74, pp. 1058–1065, May 2009.
[60]
S. Schutte, F. Van Keulen, C. P. Botha, F. C. T. van Der Helm, and H. J. Simonsz, “Friction in the Orbit,” in Proc. ARVO, 2009.
[61]
P. Reischig et al., “A note on medieval microfabrication: the visualization of a prayer nut by synchrotron-based computer X-ray tomography,” Journal of Synchrotron Radiation, vol. 16, pp. 310–313, 2009.
[62]
B. Preim and C. P. Botha, “Special Section on Visual Computing in Biology and Medicine (Guest Editorship),” Computers & Graphics, vol. 35, no. 2, pp. 218–430, 2011.
[63]
P. R. Krekel, P. W. de Bruin, C. P. Botha, E. R. Valstar, P. M. Rozing, and F. H. Post, “Evaluation of Shoulder Range of Motion Prediction: Materials and Methods,” in ASCI 2007 - Proceedings of the 13th Annual Conference of the Advanced School for Computing and Imaging, 2007.
[64]
P. R. Krekel, C. P. Botha, E. R. Valstar, R. G. H. H. Nelissen, and P. M. Rozing, “RANGE OF MOTION SIMULATION FOR DIAGNOSIS OF FEMOROACETABULAR IMPINGEMENT,” in Proc. International Society of Biomechanics (ISB), 2009.
[65]
P. R. Krekel, C. P. Botha, F. H. Post, E. R. Valstar, P. de Bruin, and P. M. Rozing, “Range of motion simulation for shoulder arthroplasty,” in 7th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery, Heidelberg, Germany, 2007, pp. 735–738.
[66]
P. Kok et al., “Integrated visualization of multi-angle bioluminescence imaging and micro CT,” in Proc. SPIE Medical Imaging 2007, 2007, vol. 6509.
[67]
S. Busking, C. P. Botha, and F. H. Post, “Direct Visualization of Deformation in Volumes,” Computer Graphics Forum, vol. 28, no. 3, pp. 799–806, 2009.
[68]
N. Bruining, S. Groot, C. P. Botha, F. H. Post, and R. Hamers, “An Intravascular Ultrasound Simulator of Coronary Plaques Based on Histopathology,” in American College of Cardiology Annual Scientific Session (ACC.07), 2007.
[69]
C. P. Botha and F. H. Post, “Hybrid Scheduling in the DeVIDE Dataflow Visualisation Environment,” in Proceedings of Simulation and Visualization, 2008, pp. 309–322.
[70]
C. P. Botha, P. R. Krekel, E. R. Valstar, P. W. De Bruin, P. M. Rozing, and F. H. Post, “Pre-operative planning and intra-operative guidance for shoulder replacement surgery,” in Scientific Visualization: Advanced Concepts (Volume 1 of Dagstuhl Followups), 2010, pp. 179–195.
[71]
J. Blaas, C. P. Botha, and F. H. Post, “Extensions of Parallel Coordinates for Interactive Exploration of Large Multi-Timepoint Data Sets,” IEEE Transactions on Visualization and Computer Graphics, vol. 14, no. 6, pp. 1436–1451, Dec. 2008.
[72]
V. F. van Ravesteijn, L. Zhao, C. P. Botha, F. H. Post, F. M. Vos, and L. J. van Vliet, “Combining mesh volume and streamline representations for polyp detection in CT colonography,” in Proc. ISBI, 2009, pp. 907–910.
[73]
L. Zhao, V. F. van Ravesteijn, C. P. Botha, R. Truyen, F. M. Vos, and F. H. Post, “Surface Curvature Line Clustering for Polyp Detection in CT Colonography,” in Proceedings of the first Eurographics workshop on Visual Computing for Biomedicine (VCBM), 2008, pp. 53–60.
[74]
L. Zhao, C. Botha, J. Bescos, R. Truyen, F. Vos, and F. Post, “Curvature Lines for Colonic Polyp Characterization,” in ASCI 2007 - Proceedings of the 13th Annual Conference of the Advanced School for Computing and Imaging, 2007.
[75]
K. de Vries et al., “Validation of the Delft Finite Element Model of Orbital Mechanics,” in Proc. ARVO, 2009.
[76]
M. D. Steenwijk, J. Milles, M. A. Buchem, J. H. C. Reiber, and C. P. Botha, “Integrated Visual Analysis for Heterogeneous Datasets in Cohort Studies,” in IEEE VisWeek Workshop on Visual Analytics in Health Care, 2010.
[77]
K. Sihan et al., “A Novel Approach to Quantitative Analysis of Intravascular Optical Coherence Tomography Imaging,” in Proceedings of Computers in Cardiology, 2008, pp. 1089–1092.
[78]
S. Schutte et al., Orbital Soft Tissue Biomechanics. Elevier, 2010.
[79]
P. J. Schaafsma, S. Schutte, H. J. Simonsz, F. H. Post, and C. P. Botha, “Dynamic Visualisation of Orbital Fat Deformation using Anatomy-Guided Interaction,” in Eurographics Workshop on Visual Computing for Biology and Medicine, 2010, pp. 1–8.
[80]
F. V. Paulovich, R. Pinho, C. P. Botha, A. Heijs, and R. Minghim, “PEx-WEB: Content-based visualization of web search results,” in Proc. 12 International Conference Information Visualisation (IV08), 2008, pp. 208–214.
[81]
S. D. Olabarriaga, J. G. Snel, C. P. Botha, and R. G. Belleman, “Integrated Support for Medical Image Analysis Methods: from Development to Clinical Application,” IEEE Transactions on Information Technology in Biomedicine, vol. 11, no. 1, pp. 47–57, Jan. 2007.
[82]
D. F. Malan, C. P. Botha, R. G. H. H. Nelissen, and E. R. Valstar, “Voxel classification of perprosthetic tissues in clinical computer tomography of loosened hip prostheses,” in Proc. ISBI, 2010, pp. 1341–1344.
[83]
K. C. Maheshwari, S. D. Olabarriaga, C. P. Botha, J. G. Snel, J. Alkemade, and A. Belloum, “Problem Solving Environment for Medical Image Analysis,” in CBMS ’07: Proceedings of the IEEE International Symposium on Computer Based Medical Systems, 2007, pp. 165–170.
[84]
R. A. Lee et al., “The Anatomy of the Thoracic Spinal Canal in Different Postures: An MRI Investigation,” Regional Anesthesia and Pain Medicine, vol. 35, no. 4, pp. 364–369, 2010.
[85]
P. R. Krekel, E. R. Valstar, F. H. Post, P. M. Rozing, and C. P. Botha, “Combined Surface and Volume Processing for Fused Joint Segmentation,” The International Journal for Computer Assisted Radiology and Surgery, vol. 5, no. 3, pp. 263–273, 2010.
[86]
P. R. Krekel, E. R. Valstar, J. de Groot, F. H. Post, R. G. H. H. Nelissen, and C. P. Botha, “Visual Analysis of Multi-Joint Kinematic Data,” Computer Graphics Forum, vol. 29, no. 3, pp. 1123–1132, 2010.
[87]
P. R. Krekel, P. W. de Bruin, E. R. Valstar, F. H. Post, P. M. Rozing, and C. P. Botha, “Evaluation of Bone Impingement Prediction in Pre-operative Planning for Shoulder Arthroplasty,” Journal of Engineering in Medicine, vol. 223, no. 7, pp. 813–822, 2009.
[88]
P. R. Krekel, C. P. Botha, P. W. de Bruin, E. R. Valstar, P. M. Rozing, and F. H. Post, “Computer-assisted shoulder replacement,” in 07291 Abstracts Collection – Scientific Visualization (Dagstuhl Seminar Proceedings), 2007, p. 2.
[89]
P. Kok et al., “Articulated Planar Reformation for Change Visualization in Small Animal Imaging,” IEEE Transactions on Visualization and Computer Graphics, vol. 16, no. 6, pp. 1396–1404, 2010.
[90]
A. G. Dunning et al., “High-Resolution MRI of Horizontal Gaze Position for Improved Optical Flow Analysis,” in Proc. ARVO, 2009.
[91]
S. Busking, C. P. Botha, and F. H. Post, “Dynamic Multi-View Exploration of Shape Spaces,” Computer Graphics Forum, vol. 29, no. 3, pp. 973–982, 2010.
[92]
C. P. Botha et al., “MRI-based visualisation of orbital fat deformation during eye motion,” in Visualization in Medicine and Life Sciences (VMLS), 2008, pp. 221–233.
[93]
J. Blaas, C. P. Botha, E. Grundy, M. W. Jones, R. S. Laramee, and F. H. Post, “Smooth graphs for visual exploration of higher order state transitions,” IEEE Transactions on Visualization and Computer Graphics, vol. 15, no. 16, 2009.
[94]
C. P. Botha, “Techniques and Software Architectures for Medical Visualisation and Image Processing,” Delft University of Technology, 2005.
[95]
J. Blaas, C. P. Botha, C. Majoie, A. Nederveen, F. M. Vos, and F. H. Post, “Interactive Visualization of Fused fMRI and DTI for Planning Brain Tumor Resections,” in Proc. SPIE Medical Imaging 2007, 2007, vol. 6509.